Resources

Promoter Databases

• EPD - Eukaryotic Promoter Database
• DBTSS - DataBase of Transcriptional Start Sites (human)
• SCPD - Saccharomyces cerevisiae promoter database
• DCPD - Drosophila core promoter database
• PlantProm DB
• Zlab at Boston University
• Myers Lab, Stanford University
• Zhang Lab, Cold Spring Harbor Lab
• PromEC - E. coli promoters

Promoter Prediction

• First Exon Finder
• CorePromoter
• CpGpromoter
• CpGProD - CpG island promoter detection
• CONPRO
• McPromoter
• PromoterInspector
• DRAGON Promoter / Gene Start Finder
• Promoter 2.0
• PromFD
• NNPP
• FunSiteP

Transcription Factor, Binding Site & Motif Databases & Analysis Tools

• TRANSFAC - public
• GeneExpress / TRRD
• RegulonDB
• Regulatory Sequence Analysis Tools
• Toucan - Regulatory sequence analysis on metazoan genomes
• Cis-regulatory Modules from Drosophila
• Muscle-Specific Regulation of Transcription
• DBTBS - A Database of Bacillus Subtilis Promoters and Transcription Factors